Please contact us at
inquiry@catalystneuro.com
Clients
Role - NWB specialist and developer
Data engineering speech neuroscience collaboration UCSF
Collaboration with - Columbia University
We worked with the labs of Dr. Edward Chang, Dr. Nitin Tandon, and Dr. Mark Richardson to use NWB 2.0 as a foundation for standardizing ECoG data. Through this effort we have restructured internal tools to work with the NWB format, and have publicly released high density ECoG recordings during speech on DANDI here . Through this project, we built:
ecogVIS, a python GUI for visualizing and annotation of raw voltage traces and standard Chang Lab ECoG preprocessing
ndx-ecog, the NWB extension for storing the cortical surface of a subject.
ndx-bipolar-table, an NWB extension for storing bipolar schema.
dx-hierarchical-behavioral-data, an NWB extension for storing hierarchical behavior like transcriptions of natural speech.
ndx-survey-data, an NWB extension for survey responses
Availability for helping other labs
We are always interested in opportunities to work with labs on data infrastructure. We have a team of computational neuroscientists who are experts in building conversion scripts, porting tools to NWB, and helping to package and publicly release data. We also have experience building custom databases and user interfaces for lab experimental records. If you are interested in working with us
Our work is entirely open source. See our GitHub organization for code of past and ongoing projects.
